HL_6FTG_023

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6FTG|1|u|C|1676, 6FTG|1|u|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_023 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1776

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6FTG|1|u|C|1675
6FTG|1|u|C|1676
6FTG|1|u|U|1677
6FTG|1|u|C|1678
6FTG|1|u|A|1679
6FTG|1|u|G|1680

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain a

uL15

Chain b

60S ribosomal protein L29

Chain o

eL42