HL_6FTG_032

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_032 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.1397

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6FTG|1|u|A|2376
6FTG|1|u|C|2377
6FTG|1|u|G|2378
6FTG|1|u|A|2379
6FTG|1|u|G|2380
6FTG|1|u|A|2381
6FTG|1|u|A|2382
6FTG|1|u|C|2383
6FTG|1|u|U|2384

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31