HL_6FTG_040

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_040 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5147

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6FTG|1|u|G|2664
6FTG|1|u|U|2665
6FTG|1|u|U|2666
6FTG|1|u|C|2667
6FTG|1|u|G|2668
6FTG|1|u|C|2669
6FTG|1|u|C|2670

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain p

Ribosomal protein L37a