HL_6FTG_050

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6FTG|1|u|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_050 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1962

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6FTG|1|u|G|3757
6FTG|1|u|U|3758
6FTG|1|u|A|3759
6FTG|1|u|A|3760
6FTG|1|u|C|3761
6FTG|1|u|U|3762
6FTG|1|u|A|3763
6FTG|1|u|U|3764
6FTG|1|u|G|3765
6FTG|1|u|A|3766
6FTG|1|u|C|3767

Current chains

Chain u

28S ribosomal RNA

Nearby chains