HL_6FTG_052

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6FTG|1|u|A|3876, 6FTG|1|u|A|3877, 6FTG|1|u|C|3878

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_052 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0739

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|G|3873
6FTG|1|u|G|3874
6FTG|1|u|G|3875
6FTG|1|u|A|3876
6FTG|1|u|A|3877
6FTG|1|u|C|3878
6FTG|1|u|G|3879
6FTG|1|u|G|3880
6FTG|1|u|G|3881
6FTG|1|u|C|3882

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32