HL_6FTG_057

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6FTG|1|u|A|4214, 6FTG|1|u|C|4221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_057 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1263

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6FTG|1|u|U|4210
6FTG|1|u|C|4211
6FTG|1|u|A|4212
6FTG|1|u|A|4213
6FTG|1|u|A|4214
6FTG|1|u|C|4215
6FTG|1|u|G|4216
6FTG|1|u|G|4217
6FTG|1|u|U|4218
6FTG|1|u|A|4219
6FTG|1|u|A|4220
6FTG|1|u|C|4221
6FTG|1|u|G|4222

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain T

eL21

Chain b

60S ribosomal protein L29