HL_6FTG_072

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6FTG|1|u|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_072 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3734

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6FTG|1|u|C|5021
6FTG|1|u|U|5022
6FTG|1|u|C|5023
6FTG|1|u|C|5024
6FTG|1|u|C|5025
6FTG|1|u|U|5026
6FTG|1|u|C|5027
6FTG|1|u|G|5028

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain U

eL22