HL_6FTG_075
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTG_075 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1984
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6FTG|1|w|C|47
6FTG|1|w|A|48
6FTG|1|w|G|49
6FTG|1|w|C|50
6FTG|1|w|U|51
6FTG|1|w|A|52
6FTG|1|w|G|53
6FTG|1|w|C|54
6FTG|1|w|U|55
6FTG|1|w|G|56
Current chains
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- uL23
- Chain h
- eL29
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
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