HL_6FTI_024

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6FTI|1|u|U|1596, 6FTI|1|u|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.092

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6FTI|1|u|A|1593
6FTI|1|u|C|1594
6FTI|1|u|G|1595
6FTI|1|u|U|1596
6FTI|1|u|G|1597
6FTI|1|u|C|1598
6FTI|1|u|A|1599
6FTI|1|u|A|1600
6FTI|1|u|A|1601
6FTI|1|u|U|1602

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

Ribosomal protein L37