HL_6FTI_031

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6FTI|1|u|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_031 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4268

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FTI|1|u|C|1978
6FTI|1|u|A|1979
6FTI|1|u|U|1980
6FTI|1|u|G|1981
6FTI|1|u|G|1982
6FTI|1|u|A|1983
6FTI|1|u|A|1984
6FTI|1|u|G|1985
6FTI|1|u|U|1986
6FTI|1|u|C|1987
6FTI|1|u|G|1988

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain t

Ribosomal protein L12