HL_6FTI_075

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6FTI|1|u|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTI_075 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3734

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6FTI|1|u|C|5021
6FTI|1|u|U|5022
6FTI|1|u|C|5023
6FTI|1|u|C|5024
6FTI|1|u|C|5025
6FTI|1|u|U|5026
6FTI|1|u|C|5027
6FTI|1|u|G|5028

Current chains

Chain u

28S rRNA

Nearby chains

Chain U

eL22