HL_6FTJ_028

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6FTJ|1|u|A|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_028 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4268

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FTJ|1|u|C|1978
6FTJ|1|u|A|1979
6FTJ|1|u|U|1980
6FTJ|1|u|G|1981
6FTJ|1|u|G|1982
6FTJ|1|u|A|1983
6FTJ|1|u|A|1984
6FTJ|1|u|G|1985
6FTJ|1|u|U|1986
6FTJ|1|u|C|1987
6FTJ|1|u|G|1988

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain t

Ribosomal protein L12