HL_6FTJ_029

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_029 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2544

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6FTJ|1|u|U|2006
6FTJ|1|u|G|2007
6FTJ|1|u|U|2008
6FTJ|1|u|A|2009
6FTJ|1|u|A|2010
6FTJ|1|u|C|2011
6FTJ|1|u|A|2012
6FTJ|1|u|A|2013

Current chains

Chain u

28S rRNA

Nearby chains

Chain m

eL40

Chain t

Ribosomal protein L12