HL_6FTJ_047
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6FTJ|1|u|A|3642, 6FTJ|1|u|A|3643, 6FTJ|1|u|U|3644, 6FTJ|1|u|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FTJ_047 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1611
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6FTJ|1|u|U|3639
6FTJ|1|u|U|3640
6FTJ|1|u|U|3641
6FTJ|1|u|A|3642
6FTJ|1|u|A|3643
6FTJ|1|u|U|3644
6FTJ|1|u|U|3645
6FTJ|1|u|A|3646
6FTJ|1|u|A|3647
6FTJ|1|u|A|3648
6FTJ|1|u|A|3649
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain j
- Ribosomal protein L37
Coloring options: