HL_6FTJ_072

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6FTJ|1|u|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTJ_072 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3734

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6FTJ|1|u|C|5021
6FTJ|1|u|U|5022
6FTJ|1|u|C|5023
6FTJ|1|u|C|5024
6FTJ|1|u|C|5025
6FTJ|1|u|U|5026
6FTJ|1|u|C|5027
6FTJ|1|u|G|5028

Current chains

Chain u

28S rRNA

Nearby chains

Chain U

Ribosomal protein L22