3D structure

PDB id
6FXC (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
6.76 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
6FXC|1|AA|U|1982
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FXC_047 not in the Motif Atlas
Homologous match to HL_5J7L_182
Geometric discrepancy: 0.1021
The information below is about HL_5J7L_182
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6FXC|1|AA|G|1976
6FXC|1|AA|G|1977
6FXC|1|AA|U|1978
6FXC|1|AA|A|1979
6FXC|1|AA|A|1980
6FXC|1|AA|G|1981
6FXC|1|AA|U|1982
6FXC|1|AA|U|1983
6FXC|1|AA|C|1984

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain AI
50S ribosomal protein L14
Chain Aa
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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