HL_6FXC_047

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6FXC|1|AA|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6FXC|1|AA|G|1976
6FXC|1|AA|G|1977
6FXC|1|AA|U|1978
6FXC|1|AA|A|1979
6FXC|1|AA|A|1980
6FXC|1|AA|G|1981
6FXC|1|AA|U|1982
6FXC|1|AA|U|1983
6FXC|1|AA|C|1984

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14

Chain Aa

Small subunit ribosomal RNA; SSU rRNA