HL_6FXC_059

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6FXC|1|AA|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1541

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6FXC|1|AA|U|2555
6FXC|1|AA|G|2556
6FXC|1|AA|U|2557
6FXC|1|AA|A|2558
6FXC|1|AA|G|2559
6FXC|1|AA|U|2560
6FXC|1|AA|C|2561
6FXC|1|AA|G|2562

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6