HL_6FXC_064

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6FXC|1|AA|G|2778, 6FXC|1|AA|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1069

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6FXC|1|AA|C|2772
6FXC|1|AA|U|2773
6FXC|1|AA|G|2774
6FXC|1|AA|A|2775
6FXC|1|AA|A|2776
6FXC|1|AA|A|2777
6FXC|1|AA|G|2778
6FXC|1|AA|C|2779
6FXC|1|AA|A|2780
6FXC|1|AA|U|2781
6FXC|1|AA|C|2782
6FXC|1|AA|U|2783
6FXC|1|AA|A|2784
6FXC|1|AA|A|2785
6FXC|1|AA|G|2786

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6

Chain AH

50S ribosomal protein L13