HL_6FXC_077

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1518

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6FXC|1|Aa|A|328
6FXC|1|Aa|A|329
6FXC|1|Aa|C|330
6FXC|1|Aa|U|331
6FXC|1|Aa|G|332
6FXC|1|Aa|A|333
6FXC|1|Aa|G|334
6FXC|1|Aa|A|335
6FXC|1|Aa|C|336
6FXC|1|Aa|A|337
6FXC|1|Aa|C|338
6FXC|1|Aa|G|339
6FXC|1|Aa|G|340
6FXC|1|Aa|U|341

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20