HL_6FXC_093

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_093 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.0879

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FXC|1|Aa|C|1087
6FXC|1|Aa|G|1088
6FXC|1|Aa|U|1089
6FXC|1|Aa|G|1090
6FXC|1|Aa|A|1091
6FXC|1|Aa|G|1092

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ae

30S ribosomal protein S5