HL_6FXC_094

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6FXC|1|Aa|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1627

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6FXC|1|Aa|G|1100
6FXC|1|Aa|U|1101
6FXC|1|Aa|U|1102
6FXC|1|Aa|A|1103
6FXC|1|Aa|A|1104
6FXC|1|Aa|G|1105
6FXC|1|Aa|U|1106
6FXC|1|Aa|C|1107

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ag

30S ribosomal protein S7