HL_6FXC_108

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

6FXC|1|BA|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_108 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.1273

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6FXC|1|BA|A|228
6FXC|1|BA|A|229
6FXC|1|BA|A|230
6FXC|1|BA|A|231
6FXC|1|BA|U|232
6FXC|1|BA|U|233

Current chains

Chain BA

23S ribosomal RNA

Nearby chains