HL_6FXC_134

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6FXC|1|BA|C|1362, 6FXC|1|BA|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_134 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1082

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6FXC|1|BA|G|1361
6FXC|1|BA|C|1362
6FXC|1|BA|U|1363
6FXC|1|BA|C|1364
6FXC|1|BA|G|1365
6FXC|1|BA|U|1366
6FXC|1|BA|C|1367

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L22