HL_6FXC_136

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6FXC|1|BA|U|1433, 6FXC|1|BA|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_136 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1403

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FXC|1|BA|G|1426
6FXC|1|BA|U|1427
6FXC|1|BA|U|1428
6FXC|1|BA|G|1429
6FXC|1|BA|A|1430
6FXC|1|BA|U|1431
6FXC|1|BA|A|1432
6FXC|1|BA|U|1433
6FXC|1|BA|U|1434
6FXC|1|BA|C|1435

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L23