HL_6FXC_147

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUAUAAC

Length

7 nucleotides

Bulged bases

6FXC|1|BA|U|1944

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_147 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3344

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6FXC|1|BA|G|1937
6FXC|1|BA|U|1938
6FXC|1|BA|A|1939
6FXC|1|BA|U|1944
6FXC|1|BA|A|1945
6FXC|1|BA|A|1946
6FXC|1|BA|C|1947

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ba

Small subunit ribosomal RNA; SSU rRNA