HL_6FXC_158

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

6FXC|1|BA|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_158 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1245

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6FXC|1|BA|C|2431
6FXC|1|BA|G|2432
6FXC|1|BA|C|2433
6FXC|1|BA|A|2434
6FXC|1|BA|U|2435
6FXC|1|BA|G|2436
6FXC|1|BA|G|2437
6FXC|1|BA|A|2438
6FXC|1|BA|A|2439
6FXC|1|BA|G|2440

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15