HL_6FXC_176

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6FXC|1|Ba|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_176 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1579

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6FXC|1|Ba|G|267
6FXC|1|Ba|G|268
6FXC|1|Ba|U|269
6FXC|1|Ba|A|270
6FXC|1|Ba|A|271
6FXC|1|Ba|C|272
6FXC|1|Ba|G|273
6FXC|1|Ba|G|274
6FXC|1|Ba|C|275

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bq

30S ribosomal protein S17

Chain Bt

30S ribosomal protein S20