HL_6FXC_188

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_188 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3853

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6FXC|1|Ba|U|849
6FXC|1|Ba|U|850
6FXC|1|Ba|U|851
6FXC|1|Ba|C|852
6FXC|1|Ba|C|853
6FXC|1|Ba|G|854

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Ab

30S ribosomal protein S2

Chain Av

Ribosome hibernation promotion factor

Chain Br

30S ribosomal protein S18