HL_6FXC_189

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FXC_189 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.0974

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FXC|1|Ba|C|871
6FXC|1|Ba|U|872
6FXC|1|Ba|A|873
6FXC|1|Ba|A|874
6FXC|1|Ba|C|875
6FXC|1|Ba|G|876

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Be

30S ribosomal protein S5

Chain Bh

30S ribosomal protein S8