HL_6FYY_011

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6FYY|1|2|G|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_011 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1111

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6FYY|1|2|G|329
6FYY|1|2|A|330
6FYY|1|2|U|331
6FYY|1|2|A|332
6FYY|1|2|G|333
6FYY|1|2|U|334
6FYY|1|2|G|335
6FYY|1|2|G|336
6FYY|1|2|C|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p