HL_6FYY_030

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6FYY|1|2|G|1242

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FYY_030 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1752

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6FYY|1|2|A|1237
6FYY|1|2|U|1238
6FYY|1|2|U|1239
6FYY|1|2|G|1240
6FYY|1|2|A|1241
6FYY|1|2|G|1242
6FYY|1|2|A|1243
6FYY|1|2|G|1244
6FYY|1|2|C|1245
6FYY|1|2|U|1246

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

KLLA0F07843p

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a