HL_6G5H_018

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6G5H|1|2|U|890

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6G5H_018 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4701

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6G5H|1|2|U|885
6G5H|1|2|A|886
6G5H|1|2|U|887
6G5H|1|2|U|888
6G5H|1|2|U|889
6G5H|1|2|U|890
6G5H|1|2|G|891
6G5H|1|2|U|892
6G5H|1|2|U|893
6G5H|1|2|G|894
6G5H|1|2|G|895
6G5H|1|2|U|896
6G5H|1|2|U|897
6G5H|1|2|U|898
6G5H|1|2|U|899
6G5H|1|2|C|900
6G5H|1|2|G|901

Current chains

Chain 2

18S ribosomal RNA

Nearby chains