HL_6G5I_016
3D structure
- PDB id
- 6G5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - State R
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6G5I_016 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.571
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6G5I|1|2|U|885
6G5I|1|2|A|886
6G5I|1|2|U|887
6G5I|1|2|U|888
6G5I|1|2|U|889
6G5I|1|2|U|890
6G5I|1|2|G|891
6G5I|1|2|U|892
6G5I|1|2|U|893
6G5I|1|2|G|894
6G5I|1|2|G|895
6G5I|1|2|U|896
6G5I|1|2|U|897
6G5I|1|2|U|898
6G5I|1|2|U|899
6G5I|1|2|C|900
6G5I|1|2|G|901
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
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