HL_6GB2_004
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAACAUU
- Length
- 8 nucleotides
- Bulged bases
- 6GB2|1|BA|A|56
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GB2_004 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.134
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
6GB2|1|BA|A|54
6GB2|1|BA|A|55
6GB2|1|BA|A|56
6GB2|1|BA|A|57
6GB2|1|BA|C|58
6GB2|1|BA|A|59
6GB2|1|BA|U|60
6GB2|1|BA|U|61
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain BI
- Mitochondrial ribosomal protein L9
- Chain BP
- Mitochondrial ribosomal protein L15
- Chain Bn
- Mitochondrial ribosomal protein L51
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