HL_6GB2_014

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACCCUAAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_014 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3585

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|A|401
6GB2|1|BA|A|402
6GB2|1|BA|C|403
6GB2|1|BA|C|404
6GB2|1|BA|C|405
6GB2|1|BA|U|406
6GB2|1|BA|A|407
6GB2|1|BA|A|408
6GB2|1|BA|A|409
6GB2|1|BA|U|410

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain B3

'Mitochondrial ribosomal protein L30

Chain BQ

Mitochondrial ribosomal protein L16

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bk

Mitochondrial ribosomal protein L48