HL_6GB2_021

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUAAU

Length

6 nucleotides

Bulged bases

6GB2|1|BA|A|689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_021 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3976

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|A|688
6GB2|1|BA|A|689
6GB2|1|BA|U|690
6GB2|1|BA|A|691
6GB2|1|BA|A|692
6GB2|1|BA|U|693

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BR

Mitochondrial ribosomal protein L17

Chain BW

Mitochondrial ribosomal protein L22