HL_6GB2_022

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAA

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_022 not in the Motif Atlas

Geometric match to HL_7RQB_039

Geometric discrepancy: 0.0694

The information below is about HL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.5

Basepair signature

cWW-F

Number of instances in this motif group

32

Unit IDs

6GB2|1|BA|U|731
6GB2|1|BA|A|732
6GB2|1|BA|A|733
6GB2|1|BA|A|734

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2

Chain Ba

Mitochondrial ribosomal protein L37