HL_6GB2_027

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUUCUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_027 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5841

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|G|906
6GB2|1|BA|U|907
6GB2|1|BA|A|908
6GB2|1|BA|U|909
6GB2|1|BA|U|910
6GB2|1|BA|C|911
6GB2|1|BA|U|912
6GB2|1|BA|G|913
6GB2|1|BA|A|914
6GB2|1|BA|C|915

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial