HL_6GB2_034

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_034 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1366

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GB2|1|BA|C|1198
6GB2|1|BA|A|1199
6GB2|1|BA|A|1200
6GB2|1|BA|A|1201
6GB2|1|BA|C|1202
6GB2|1|BA|C|1203
6GB2|1|BA|A|1204
6GB2|1|BA|G|1205

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain B8

Mitochondrial ribosomal protein L35

Chain BP

Mitochondrial ribosomal protein L15

Chain Bb

Mitochondrial ribosomal protein L38