HL_6GB2_037

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAACCG

Length

8 nucleotides

Bulged bases

6GB2|1|BA|G|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_037 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1454

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

6GB2|1|BA|U|1351
6GB2|1|BA|G|1352
6GB2|1|BA|C|1353
6GB2|1|BA|A|1354
6GB2|1|BA|A|1355
6GB2|1|BA|C|1356
6GB2|1|BA|C|1357
6GB2|1|BA|G|1358

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B9

Ribosomal protein