HL_6GC0_026

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

6GC0|1|A|U|958, 6GC0|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_026 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2566

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GC0|1|A|G|954
6GC0|1|A|U|955
6GC0|1|A|G|956
6GC0|1|A|C|957
6GC0|1|A|U|958
6GC0|1|A|A|959
6GC0|1|A|A|960
6GC0|1|A|C|961
6GC0|1|A|G|962
6GC0|1|A|U|963

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA