HL_6GC0_047

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

6GC0|1|A|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_047 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.2912

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GC0|1|A|C|1868
6GC0|1|A|G|1869
6GC0|1|A|C|1870
6GC0|1|A|A|1871
6GC0|1|A|A|1872
6GC0|1|A|G|1873

Current chains

Chain A

23S ribosomal RNA

Nearby chains