HL_6GC0_049

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6GC0|1|A|A|2030, 6GC0|1|A|A|2031, 6GC0|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1588

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6GC0|1|A|G|2027
6GC0|1|A|U|2028
6GC0|1|A|G|2029
6GC0|1|A|A|2030
6GC0|1|A|A|2031
6GC0|1|A|G|2032
6GC0|1|A|A|2033
6GC0|1|A|U|2034
6GC0|1|A|G|2035
6GC0|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21