HL_6GC4_034

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6GC4|1|A|A|1453, 6GC4|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_034 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.1469

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6GC4|1|A|C|1451
6GC4|1|A|G|1452
6GC4|1|A|A|1453
6GC4|1|A|C|1454
6GC4|1|A|G|1455
6GC4|1|A|G|1456
6GC4|1|A|U|1457
6GC4|1|A|U|1458
6GC4|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17