HL_6GC4_059

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GC4|1|A|G|2751, 6GC4|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_059 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1286

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6GC4|1|A|C|2745
6GC4|1|A|U|2746
6GC4|1|A|G|2747
6GC4|1|A|A|2748
6GC4|1|A|A|2749
6GC4|1|A|A|2750
6GC4|1|A|G|2751
6GC4|1|A|C|2752
6GC4|1|A|A|2753
6GC4|1|A|U|2754
6GC4|1|A|C|2755
6GC4|1|A|U|2756
6GC4|1|A|A|2757
6GC4|1|A|A|2758
6GC4|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13