HL_6GC6_050

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GC6|1|A|G|2751, 6GC6|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_050 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.2129

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6GC6|1|A|C|2745
6GC6|1|A|U|2746
6GC6|1|A|G|2747
6GC6|1|A|A|2748
6GC6|1|A|A|2749
6GC6|1|A|A|2750
6GC6|1|A|G|2751
6GC6|1|A|C|2752
6GC6|1|A|A|2753
6GC6|1|A|U|2754
6GC6|1|A|C|2755
6GC6|1|A|U|2756
6GC6|1|A|A|2757
6GC6|1|A|A|2758
6GC6|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6