HL_6GQ1_021

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6GQ1|1|1|U|879, 6GQ1|1|1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_021 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1714

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|A|876
6GQ1|1|1|C|877
6GQ1|1|1|G|878
6GQ1|1|1|U|879
6GQ1|1|1|G|880
6GQ1|1|1|C|881
6GQ1|1|1|A|882
6GQ1|1|1|A|883
6GQ1|1|1|A|884
6GQ1|1|1|U|885

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain j

60S ribosomal protein L37-A