HL_6GQ1_057
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6GQ1|1|1|A|2637, 6GQ1|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQ1_057 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.2067
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6GQ1|1|1|U|2633
6GQ1|1|1|U|2634
6GQ1|1|1|A|2635
6GQ1|1|1|A|2636
6GQ1|1|1|A|2637
6GQ1|1|1|C|2638
6GQ1|1|1|G|2639
6GQ1|1|1|A|2640
6GQ1|1|1|U|2641
6GQ1|1|1|A|2642
6GQ1|1|1|A|2643
6GQ1|1|1|C|2644
6GQ1|1|1|G|2645
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- 60S ribosomal protein L29
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