HL_8C3A_056

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases (A, C, G, U)

2609A, 2616C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.7

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8C3A|1|1|U|2605
8C3A|1|1|U|2606
8C3A|1|1|A|2607
8C3A|1|1|A|2608
8C3A|1|1|A|2609
8C3A|1|1|C|2610
8C3A|1|1|G|2611
8C3A|1|1|A|2612
8C3A|1|1|U|2613
8C3A|1|1|A|2614
8C3A|1|1|A|2615
8C3A|1|1|C|2616
8C3A|1|1|G|2617

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain r

60S ribosomal protein L10