HL_6GQ1_093

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQ1_093 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3691

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GQ1|1|2|A|829
6GQ1|1|2|U|830
6GQ1|1|2|U|831
6GQ1|1|2|U|832
6GQ1|1|2|U|833
6GQ1|1|2|G|834
6GQ1|1|2|U|835
6GQ1|1|2|U|836
6GQ1|1|2|G|837
6GQ1|1|2|G|838
6GQ1|1|2|U|839
6GQ1|1|2|U|840
6GQ1|1|2|U|841
6GQ1|1|2|C|842
6GQ1|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A